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Crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from stenotrophomonas maltophilia K279A in complex with plp
Analyse Crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6W80
- Type
- protein
- Length
- 430 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutamate-1-semialdehyde 2,1-aminomutase
- EC
- 5.4.3.8
- UniProt
- B2FT35
- Ligands
- PLP
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) | protein | 430 | 43% helix, 17% strand | B2FT35 |
Ligands and binding sites
- PLP · Pyridoxal-5'-phosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 648 | 0.69 | 0.77 | 65 | PLP |
| 2 | 111 | 0.37 | 0.74 | 18 | empty |
| 3 | 74 | 0.32 | 0.74 | 16 | empty |
Compared structures
- 6W80 · Crystal structure of Glutamate-1-semialdehyde 2,1-aminomutase from Stenotrophomonas… · the same entry in another collection · chain A against A, TM-score 1.00
- B2FT35 · AlphaFold monomer V2.0 prediction for glutamate-1-semialdehyde 2,1-aminomutase (B2FT35) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2FT35
- Elsewhere: RCSB PDB 6W80 · PDBe 6W80 · UniProt B2FT35
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