Research workbench
Crystal structure of SARS-cov and SARS-cov-2 reactive human antibody CR3022
Analyse Crystal structure of SARS-cov and SARS-cov-2 reactive human antibody CR3022 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6W7Y
- Type
- protein
- Length
- 866 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CR3022 heavy chain; CR3022 light chain
- Pockets
- 8 · best druggability 0.71
Structure
x-ray diffraction · 4 distinct chains · 5% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | CR3022 heavy chain | protein | 214 | 3% helix, 49% strand | — |
| L | CR3022 light chain | protein | 218 | 5% helix, 49% strand | — |
| A | CR3022 heavy chain | protein | 215 | 7% helix, 45% strand | — |
| B | CR3022 light chain | protein | 219 | 5% helix, 46% strand | — |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1050 | 0.71 | 0.75 | 102 | empty |
| 2 | 342 | 0.57 | 0.76 | 38 | empty |
| 3 | 125 | 0.53 | 0.82 | 31 | empty |
| 4 | 67 | 0.44 | 0.82 | 19 | empty |
| 5 | 96 | 0.36 | 0.75 | 20 | empty |
Interfaces
5 interfaces between chains.
- A–B · 1882 Ų buried · 12 hydrogen bonds · protein-protein
- H–L · 1670 Ų buried · 13 hydrogen bonds · protein-protein
- L–A · 415 Ų buried · 5 hydrogen bonds · protein-protein
- H–A · 96 Ų buried · 0 hydrogen bonds · protein-protein
- L–B · 38 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 disulfide (disulfide).
Compared structures
- 6W7Y · Crystal structure of SARS-CoV and SARS-CoV-2 reactive human antibody CR3022 · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6W7Y · PDBe 6W7Y
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