Research workbench
Blsa photo-activated state
Analyse Blsa photo-activated state in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6W72
- Type
- protein
- Length
- 280 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bluf domain-containing protein
- UniProt
- V5VB82
- Ligands
- FMN
- Pockets
- 4 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Bluf domain-containing protein | protein | 140 | 41% helix, 29% strand | V5VB82 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 128 | 0.65 | 0.87 | 19 | FMN |
| 2 | 130 | 0.64 | 0.87 | 22 | FMN |
| 3 | 56 | 0.38 | 0.80 | 17 | empty |
| 4 | 50 | 0.37 | 0.81 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 488 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 6W72 · BlsA photo-activated state · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt V5VB82
- Elsewhere: RCSB PDB 6W72 · PDBe 6W72 · UniProt V5VB82
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