Research workbench
Peptoid-containing collagen peptide
Analyse Peptoid-containing collagen peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6W47
- Type
- protein
- Length
- 78 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Collagen-like peptide
- Ligands
- NH2
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Collagen-like peptide | protein | 26 | 0% helix, 0% strand | — |
| B, C | Collagen-like peptide | protein | 26 | 0% helix, 0% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- A–C · 860 Ų buried · 11 hydrogen bonds · protein-protein
- B–C · 840 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 783 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 29 modified (hydroxylation, methylation, nonstandard).
Compared structures
- 6W47 · Peptoid-Containing Collagen Peptide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6W47 · PDBe 6W47
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