Research workbench
RD1NTF2_05_I64F_A80G_T94P_D101K_L106W
Analyse RD1NTF2_05_I64F_A80G_T94P_D101K_L106W in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6W3F
- Type
- protein
- Length
- 229 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RD1NTF2_05_I64F_A80G_T94P_D101K_L106W
- Pockets
- 2 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RD1NTF2_05_I64F_A80G_T94P_D101K_L106W | protein | 115 | 33% helix, 52% strand | — |
| B | RD1NTF2_05_I64F_A80G_T94P_D101K_L106W | protein | 114 | 31% helix, 53% strand | — |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 223 | 0.72 | 0.87 | 27 | empty |
| 2 | 146 | 0.69 | 0.88 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 650 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 6W3F · Rd1NTF2_05_I64F_A80G_T94P_D101K_L106W · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6W3F · PDBe 6W3F
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