Research workbench
Crystal structure of laccase from thermus thermophilus HB27 in reducing conditions (NA2,S2,O2, 20 min)
Analyse Crystal structure of laccase from thermus thermophilus HB27 in reducing… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6W2K
- Type
- protein
- Length
- 880 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Laccase
- EC
- 1.10.3.2
- UniProt
- Q72HW2
- Ligands
- CU
- Pockets
- 10 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Laccase (EC 1.10.3.2) | protein | 440 | 6% helix, 49% strand | Q72HW2 |
Ligands and binding sites
- CU · Copper (II) ion · metal · 11 copies · chains A, B
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 8 copies · chains A, B
- MRD · (4R)-2-methylpentane-2,4-diol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1128 | 0.78 | 0.80 | 89 | MPD |
| 2 | 273 | 0.62 | 0.80 | 29 | empty |
| 3 | 273 | 0.61 | 0.79 | 27 | empty |
| 4 | 266 | 0.56 | 0.77 | 37 | empty |
| 5 | 104 | 0.42 | 0.77 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 553 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 6W2K · Crystal structure of laccase from Thermus thermophilus HB27 in reducing conditions… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72HW2
- Elsewhere: RCSB PDB 6W2K · PDBe 6W2K · UniProt Q72HW2
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