Research workbench
Crystal structure of FAB356 in complex with NPNA2 peptide from circumsporozoite protein
Analyse Crystal structure of FAB356 in complex with NPNA2 peptide from circumsporozoite… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6W05
- Type
- protein
- Length
- 444 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- FAB356 heavy chain; FAB356 light chain; NPNA2 peptide
- Pockets
- 4 · best druggability 0.54
Structure
x-ray diffraction · 3 distinct chains · 7% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | FAB356 heavy chain | protein | 224 | 8% helix, 51% strand | — |
| L | FAB356 light chain | protein | 212 | 6% helix, 51% strand | — |
| P | NPNA2 peptide | protein | 8 | 0% helix, 0% strand | — |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 388 | 0.54 | 0.73 | 46 | empty |
| 2 | 121 | 0.40 | 0.75 | 23 | empty |
| 3 | 88 | 0.35 | 0.75 | 17 | empty |
| 4 | 54 | 0.25 | 0.72 | 11 | empty |
Interfaces
3 interfaces between chains.
- H–L · 1853 Ų buried · 12 hydrogen bonds · protein-protein
- H–P · 509 Ų buried · 7 hydrogen bonds · protein-protein
- L–P · 128 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 6W05 · Crystal structure of Fab356 in complex with NPNA2 peptide from circumsporozoite protein · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6W05 · PDBe 6W05
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