Research workbench
RRNA methyltransferase avira from streptomyces viridochromogenes at 1.5A
Analyse RRNA methyltransferase avira from streptomyces viridochromogenes at 1.5A in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1O9G
- Type
- protein
- Length
- 249 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RRNA methyltransferase
- UniProt
- Q9F5K5
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RRNA methyltransferase | protein | 249 | 43% helix, 17% strand | Q9F5K5 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 124 | 0.58 | 0.84 | 30 | empty |
| 2 | 61 | 0.38 | 0.79 | 18 | empty |
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 1O9G · rRNA methyltransferase aviRa from Streptomyces viridochromogenes at 1.5A · the same entry in another collection · chain A against A, TM-score 1.00
- Q9F5K5 · AlphaFold monomer V2.0 prediction for 23S rRNA (GUANINE(2535)-N(1))-methyltransferase… · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9F5K5
- Elsewhere: RCSB PDB 1O9G · PDBe 1O9G · UniProt Q9F5K5
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