Research workbench
Naegleria gruberi RNA ligase K170A mutant apo
Analyse Naegleria gruberi RNA ligase K170A mutant apo in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6VT0
- Type
- protein
- Length
- 335 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA ligase
- UniProt
- D2W2Z5
- Pockets
- 4 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 22% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA ligase | protein | 335 | 22% helix, 35% strand | D2W2Z5 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 526 | 0.78 | 0.85 | 56 | empty |
| 2 | 157 | 0.50 | 0.78 | 21 | empty |
| 3 | 68 | 0.37 | 0.78 | 18 | empty |
| 4 | 107 | 0.36 | 0.74 | 23 | empty |
Compared structures
- 6VT0 · Naegleria gruberi RNA ligase K170A mutant apo · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D2W2Z5
- Elsewhere: RCSB PDB 6VT0 · PDBe 6VT0 · UniProt D2W2Z5
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