Research workbench
The crystal structure of echinococcus granulosus fatty-acid-binding protein 1
Analyse The crystal structure of echinococcus granulosus fatty-acid-binding protein 1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1O8V
- Type
- protein
- Length
- 133 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fatty acid binding protein homolog
- UniProt
- Q02970
- Ligands
- ACE, PLM
- Pockets
- 1 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 15% helix, 58% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fatty acid binding protein homolog | protein | 133 | 15% helix, 58% strand | Q02970 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 338 | 0.85 | 0.94 | 37 | PLM |
Modifications
Observed in the structure: 1 covalent, 1 modified (covalent ligand, oxidation).
Compared structures
- 1O8V · The crystal structure of Echinococcus granulosus fatty-acid-binding protein 1 · the same entry in another collection · chain A against A, TM-score 1.00
- Q02970 · AlphaFold monomer V2.0 prediction for fatty acid-binding protein homolog 1 (Q02970) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q02970
- Elsewhere: RCSB PDB 1O8V · PDBe 1O8V · UniProt Q02970
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.