Research workbench
The active site of the molybdenum cofactor biosynthetic protein domain CNX1G
Analyse The active site of the molybdenum cofactor biosynthetic protein domain CNX1G in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1O8O
- Type
- protein
- Length
- 485 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Molybdopterin biosynthesis CNX1 protein
- UniProt
- Q39054
- Pockets
- 1 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 48% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Molybdopterin biosynthesis CNX1 protein | protein | 161 | 48% helix, 21% strand | Q39054 |
| B | Molybdopterin biosynthesis CNX1 protein | protein | 163 | 48% helix, 21% strand | Q39054 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1045 | 0.81 | 0.83 | 148 | empty |
Interfaces
3 interfaces between chains.
- B–C · 843 Ų buried · 9 hydrogen bonds · protein-protein
- A–C · 831 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 820 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 1O8O · The active site of the molybdenum cofactor biosynthetic protein domain Cnx1G · the same entry in another collection · chain A against A, TM-score 1.00
- Q39054 · AlphaFold monomer V2.0 prediction for molybdopterin biosynthesis protein CNX1 (Q39054) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q39054
- Elsewhere: RCSB PDB 1O8O · PDBe 1O8O · UniProt Q39054
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