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Structure of a bacterial ATM1-family ABC exporter

Analyse Structure of a bacterial ATM1-family ABC exporter in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6VQU
Type: protein
Length: 1,178 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ATM1-type heavy metal exporter
UniProt: Q2G506
Pockets: 12 · best druggability 0.79

Structure

electron microscopy · 1 distinct chain · 66% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	ATM1-type heavy metal exporter	protein	589	66% helix, 10% strand	Q2G506

Pockets

12 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1046	0.79	0.81	68	empty
2	53	0.67	0.96	16	empty
3	217	0.66	0.84	33	empty
4	50	0.65	0.95	17	empty
5	176	0.65	0.85	27	empty

Interfaces

1 interface between chains.

A–B · 5774 Å² buried · 41 hydrogen bonds · protein-protein

Compared structures

6VQU · Structure of a bacterial Atm1-family ABC exporter · the same entry in another collection · chain A against A, TM-score 1.00
Q2G506 · AlphaFold monomer V2.0 prediction for ATM1-type heavy metal exporter (Q2G506) · a predicted model of the same protein · chain B against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2G506
Elsewhere: RCSB PDB 6VQU · PDBe 6VQU · UniProt Q2G506

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