Research workbench
Crystal structure of ygbl, a putative ALDOLASE/EPIMERASE/DECARBOXYLASE from klebsiella pneumoniae
Analyse Crystal structure of ygbl, a putative ALDOLASE/EPIMERASE/DECARBOXYLASE from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6VOQ
- Type
- protein
- Length
- 207 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aldolase
- EC
- 4.1.2.17
- UniProt
- Q0QC76
- Ligands
- ZN, CL
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Aldolase (EC 4.1.2.17) | protein | 207 | 38% helix, 15% strand | Q0QC76 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.33 | 0.76 | 23 | CL |
Compared structures
- 6VOQ · Crystal structure of YgbL, a putative aldolase/epimerase/decarboxylase from Klebsiella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0QC76
- Elsewhere: RCSB PDB 6VOQ · PDBe 6VOQ · UniProt Q0QC76
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