Research workbench
Chloroplast ATP synthase (O3, CF1FO)
Analyse Chloroplast ATP synthase (O3, CF1FO) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6VMG
- Type
- protein
- Length
- 5,170 residues
- Chains
- 26
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATP synthase subunit a, chloroplastic; ATP synthase subunit B, chloroplastic; ATP…
- EC
- 7.1.2.2
- UniProt
- P06451, P06453, P11402, P31853, P00833, P05435, P69447, P06450, P00825
- Pockets
- 20 · best druggability 0.86
Structure
electron microscopy · 12 distinct chains · 49% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| a | ATP synthase subunit a, chloroplastic | protein | 222 | 68% helix, 2% strand | P06451 |
| I | ATP synthase subunit B, chloroplastic | protein | 148 | 97% helix, 0% strand | P06453 |
| d | ATP synthase delta chain, chloroplastic | protein | 177 | 59% helix, 10% strand | P11402 |
| J | ATP synthase subunit B', chloroplastic | protein | 131 | 95% helix, 0% strand | P31853 |
| e | ATP synthase epsilon chain, chloroplastic | protein | 129 | 30% helix, 36% strand | P00833 |
| g | ATP synthase gamma chain, chloroplastic | protein | 321 | 53% helix, 11% strand | P05435 |
| Z, Q, P, O, N, M, R, Y, X, W, S, T, U, V | ATP synthase subunit C, chloroplastic | protein | 79 | 85% helix, 0% strand | P69447 |
| A | ATP synthase subunit alpha, chloroplastic (EC 7.1.2.2) | protein | 495 | 45% helix, 15% strand | P06450 |
| F, D | ATP synthase subunit beta, chloroplastic (EC 7.1.2.2) | protein | 479 | 37% helix, 21% strand | P00825 |
| C | ATP synthase subunit alpha, chloroplastic (EC 7.1.2.2) | protein | 501 | 39% helix, 19% strand | P06450 |
| E | ATP synthase subunit beta, chloroplastic (EC 7.1.2.2) | protein | 478 | 38% helix, 18% strand | P00825 |
| B | ATP synthase subunit alpha, chloroplastic (EC 7.1.2.2) | protein | 504 | 42% helix, 17% strand | P06450 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 945 | 0.86 | 0.88 | 208 | empty |
| 2 | 942 | 0.86 | 0.87 | 165 | empty |
| 3 | 545 | 0.84 | 0.90 | 117 | empty |
| 4 | 733 | 0.84 | 0.87 | 119 | empty |
| 5 | 1128 | 0.83 | 0.84 | 224 | empty |
Interfaces
48 interfaces between chains.
- R–S · 1079 Ų buried · 2 hydrogen bonds · protein-protein
- I–J · 1064 Ų buried · 0 hydrogen bonds · protein-protein
- T–U · 1064 Ų buried · 2 hydrogen bonds · protein-protein
- B–D · 1005 Ų buried · 6 hydrogen bonds · protein-protein
- X–W · 994 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6VMG · Chloroplast ATP synthase (O3, CF1FO) · the same entry in another collection · chain e against e, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06451
- Every structure of UniProt P06453
- Every structure of UniProt P11402
- Every structure of UniProt P31853
- Every structure of UniProt P00833
- Every structure of UniProt P05435
- Every structure of UniProt P69447
- Every structure of UniProt P06450
- Every structure of UniProt P00825
- Elsewhere: RCSB PDB 6VMG · PDBe 6VMG · UniProt P06451 · UniProt P06453 · UniProt P11402 · UniProt P31853 · UniProt P00833 · UniProt P05435 · UniProt P69447 · UniProt P06450 · UniProt P00825
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