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Crystal structure of mouse xm RABL3 in complex with gtpgammss

Analyse Crystal structure of mouse xm RABL3 in complex with gtpgammss in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6VIK
Type: protein
Length: 173 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Rab-like protein 3
UniProt: Q9D4V7
Ligands: GSP, MG
Pockets: 2 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Rab-like protein 3	protein	173	36% helix, 25% strand	Q9D4V7

Ligands and binding sites

GSP · 5'-guanosine-diphosphate-monothiophosphate · ligand · chains B
MG · Magnesium ion · metal · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	112	0.41	0.76	19	empty
2	75	0.38	0.78	15	empty

Compared structures

6VIK · Crystal structure of mouse xm RABL3 in complex with GTPgammsS · the same entry in another collection · chain B against B, TM-score 1.00
Q9D4V7 · AlphaFold monomer V2.0 prediction for rab-like protein 3 (Q9D4V7) · a predicted model of the same protein · chain B against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9D4V7
Elsewhere: RCSB PDB 6VIK · PDBe 6VIK · UniProt Q9D4V7

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