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The ligand-free structure of mouse RABL3

Analyse The ligand-free structure of mouse RABL3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6VIH
Type: protein
Length: 378 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Rab-like protein 3
UniProt: Q9D4V7
Pockets: 1 · best druggability 0.60

Structure

x-ray diffraction · 2 distinct chains · 37% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Rab-like protein 3	protein	191	37% helix, 23% strand	Q9D4V7
A	Rab-like protein 3	protein	187	36% helix, 22% strand	Q9D4V7

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	448	0.60	0.75	57	empty

Interfaces

1 interface between chains.

B–A · 872 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

6VIH · The ligand-free structure of mouse RABL3 · the same entry in another collection · chain B against B, TM-score 1.00
Q9D4V7 · AlphaFold monomer V2.0 prediction for rab-like protein 3 (Q9D4V7) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9D4V7
Elsewhere: RCSB PDB 6VIH · PDBe 6VIH · UniProt Q9D4V7

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