Research workbench
Crystal structure of a single stranded DNA binding protein
Analyse Crystal structure of a single stranded DNA binding protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1O7I
- Type
- protein
- Length
- 229 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Single stranded DNA binding protein
- UniProt
- Q97W73
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.51
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Single stranded DNA binding protein | protein | 115 | 8% helix, 48% strand | Q97W73 |
| B | Single stranded DNA binding protein | protein | 114 | 8% helix, 50% strand | Q97W73 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 236 | 0.51 | 0.75 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 443 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 1O7I · Crystal structure of a single stranded DNA binding protein · the same entry in another collection · chain A against A, TM-score 1.00
- Q97W73 · AlphaFold monomer V2.0 prediction for single-stranded DNA binding protein ssb (Q97W73) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97W73
- Elsewhere: RCSB PDB 1O7I · PDBe 1O7I · UniProt Q97W73
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