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Metal-bound C-terminal domain of czcd transporter from pseudomonas aeruginosa

Analyse Metal-bound C-terminal domain of czcd transporter from pseudomonas aeruginosa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6VD8
Type: protein
Length: 163 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable cation efflux system protein
UniProt: Q9I6A3
Ligands: ZN
Pockets: 1 · best druggability 0.48

Structure

x-ray diffraction · 2 distinct chains · 33% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable cation efflux system protein	protein	85	33% helix, 29% strand	Q9I6A3
B	Probable cation efflux system protein	protein	78	32% helix, 35% strand	Q9I6A3

Ligands and binding sites

ZN · Zinc ion · metal · 5 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	57	0.48	0.85	18	empty

Interfaces

1 interface between chains.

A–B · 580 Å² buried · 20 hydrogen bonds · protein-protein

Compared structures

6VD8 · Metal-bound C-terminal domain of CzcD transporter from Pseudomonas aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9I6A3
Elsewhere: RCSB PDB 6VD8 · PDBe 6VD8 · UniProt Q9I6A3

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