Research workbench
OMPK37 porin
Analyse OMPK37 porin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6V78
- Type
- protein
- Length
- 1,059 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- OMPK37
- UniProt
- S5UCA2
- Pockets
- 11 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | OMPK37 | protein | 353 | 5% helix, 54% strand | S5UCA2 |
Pockets
11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 134 | 0.76 | 0.95 | 47 | empty |
| 2 | 997 | 0.75 | 0.78 | 76 | empty |
| 3 | 1008 | 0.75 | 0.77 | 81 | empty |
| 4 | 974 | 0.74 | 0.78 | 74 | empty |
| 5 | 271 | 0.51 | 0.75 | 36 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1813 Ų buried · 35 hydrogen bonds · protein-protein
- B–C · 1786 Ų buried · 36 hydrogen bonds · protein-protein
- A–C · 1716 Ų buried · 30 hydrogen bonds · protein-protein
Compared structures
- 6V78 · OmpK37 porin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt S5UCA2
- Elsewhere: RCSB PDB 6V78 · PDBe 6V78 · UniProt S5UCA2
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