Research workbench
Crystal structure of T. thermophilus methylenetetrahydrofolate dehydrogenase (mthfd)
Analyse Crystal structure of T. thermophilus methylenetetrahydrofolate dehydrogenase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6V6Y
- Type
- protein
- Length
- 277 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bifunctional protein fold
- EC
- 1.5.1.5, 3.5.4.9
- UniProt
- Q5SJ94
- Ligands
- NAP
- Pockets
- 3 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bifunctional protein fold (EC 1.5.1.5, 3.5.4.9) | protein | 277 | 44% helix, 18% strand | Q5SJ94 |
Ligands and binding sites
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 450 | 0.67 | 0.78 | 48 | NAP |
| 2 | 165 | 0.45 | 0.75 | 22 | empty |
| 3 | 55 | 0.33 | 0.77 | 17 | empty |
Compared structures
- 6V6Y · Crystal Structure of T. thermophilus methylenetetrahydrofolate dehydrogenase (MTHFD) · the same entry in another collection · chain A against A, TM-score 1.00
- Q5SJ94 · AlphaFold monomer V2.0 prediction for bifunctional protein fold (Q5SJ94) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SJ94
- Elsewhere: RCSB PDB 6V6Y · PDBe 6V6Y · UniProt Q5SJ94
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