Research workbench
Crystal structure of metallo beta lactamase from hirschia baltica in complex with succinate
Analyse Crystal structure of metallo beta lactamase from hirschia baltica in complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6V5M
- Type
- protein
- Length
- 221 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-lactamase
- EC
- 3.5.2.6
- UniProt
- C6XID6
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-lactamase (EC 3.5.2.6) | protein | 221 | 25% helix, 29% strand | C6XID6 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
- FMT · Formic acid · additive · 3 copies · chains A
- SIN · Succinic acid · additive · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
- BTB · 2-[bis-(2-hydroxy-ethyl)-amino]-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 79 | 0.36 | 0.76 | 16 | ZN, SIN, EDO |
Compared structures
- 6V5M · Crystal Structure of Metallo Beta Lactamase from Hirschia baltica in Complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C6XID6
- Elsewhere: RCSB PDB 6V5M · PDBe 6V5M · UniProt C6XID6
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