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Declic N-terminal domain 34-202

Analyse Declic N-terminal domain 34-202 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6V4B
Type: protein
Length: 320 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: NEUR_CHAN_LBD domain-containing protein
UniProt: V4JF97
Ligands: PO4
Pockets: 1 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 19% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	NEUR_CHAN_LBD domain-containing protein	protein	160	19% helix, 43% strand	V4JF97

Ligands and binding sites

PO4 · Phosphate ion · ion · 4 copies · chains A, B
GOL · Glycerol · additive · 4 copies · chains A, B
EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	399	0.58	0.75	37	empty

Interfaces

1 interface between chains.

A–B · 184 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

6V4B · DeCLIC N-terminal Domain 34-202 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt V4JF97
Elsewhere: RCSB PDB 6V4B · PDBe 6V4B · UniProt V4JF97

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