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Crystal structure of an hypothetical protein
Analyse Crystal structure of an hypothetical protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1O67
- Type
- protein
- Length
- 638 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein yiim
- UniProt
- P32157
- Pockets
- 6 · best druggability 0.79
Structure
x-ray diffraction · 3 distinct chains · 34% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein yiim | protein | 214 | 36% helix, 26% strand | P32157 |
| B | Hypothetical protein yiim | protein | 214 | 33% helix, 25% strand | P32157 |
| C | Hypothetical protein yiim | protein | 210 | 33% helix, 26% strand | P32157 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 953 | 0.79 | 0.81 | 96 | empty |
| 2 | 278 | 0.51 | 0.74 | 44 | empty |
| 3 | 189 | 0.42 | 0.73 | 24 | empty |
| 4 | 150 | 0.40 | 0.73 | 22 | empty |
| 5 | 60 | 0.34 | 0.77 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 590 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 18 modified (engineered).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32157
- Elsewhere: RCSB PDB 1O67 · PDBe 1O67 · UniProt P32157
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