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DYNU16 crystal structure, a putative protein in the dynemicin biosynthetic locus

Analyse DYNU16 crystal structure, a putative protein in the dynemicin biosynthetic locus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6V04
Type: protein
Length: 269 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized srpbcc domain-containing protein
UniProt: B2BM46
Ligands: NA, MG, CL
Pockets: 1 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 26% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized srpbcc domain-containing protein	protein	269	26% helix, 36% strand	B2BM46

Ligands and binding sites

NA · Sodium ion · metal · chains A
MG · Magnesium ion · metal · chains A
CL · Chloride ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	401	0.75	0.85	39	empty

Compared structures

6V04 · DynU16 crystal structure, a putative protein in the dynemicin biosynthetic locus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B2BM46
Elsewhere: RCSB PDB 6V04 · PDBe 6V04 · UniProt B2BM46

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