Research workbench

Crystal structure of photoactive yellow protein (pyp); F96(4-if) construct with 3-br-P-coumaric acid chromophore

Analyse Crystal structure of photoactive yellow protein (pyp); F96(4-if) construct with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6UN0
Type: protein
Length: 126 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Photoactive yellow protein
UniProt: P16113
Ligands: QBV
Pockets: 1 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Photoactive yellow protein	protein	126	29% helix, 28% strand	P16113

Ligands and binding sites

QBV · (2E)-3-(3-bromo-4-hydroxyphenyl)prop-2-enoic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.69	0.97	16	QBV

Modifications

Observed in the structure: 1 covalent, 1 modified (covalent ligand, nonstandard).

Compared structures

6UN0 · Crystal structure of photoactive yellow protein (PYP); F96(4-IF) construct with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P16113
Elsewhere: RCSB PDB 6UN0 · PDBe 6UN0 · UniProt P16113

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.