Research workbench
Crystal structure of a lysozyme from litopenaeus vannamei
Analyse Crystal structure of a lysozyme from litopenaeus vannamei in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6UL3
- Type
- protein
- Length
- 267 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysozyme
- EC
- 3.2.1.17
- UniProt
- Q95V66
- Pockets
- 3 · best druggability 0.54
Structure
x-ray diffraction · 2 distinct chains · 49% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysozyme (EC 3.2.1.17) | protein | 133 | 48% helix, 8% strand | Q95V66 |
| B | Lysozyme (EC 3.2.1.17) | protein | 134 | 51% helix, 8% strand | Q95V66 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 262 | 0.54 | 0.76 | 47 | empty |
| 2 | 137 | 0.46 | 0.77 | 26 | empty |
| 3 | 157 | 0.46 | 0.76 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 697 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 disulfide (disulfide).
Compared structures
- 6UL3 · Crystal structure of a lysozyme from Litopenaeus vannamei · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q95V66
- Elsewhere: RCSB PDB 6UL3 · PDBe 6UL3 · UniProt Q95V66
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