Research workbench

Crystal structure of a DIB2-split protein

Analyse Crystal structure of a DIB2-split protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6UKL
Type: protein
Length: 457 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P0A902
Ligands: HEM, SO4

Structure

x-ray diffraction · 5 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, E	—	protein	87	—	P0A902
C	—	protein	86	—	P0A902
D	—	protein	68	—	P0A902
F	—	protein	66	—	P0A902
B	—	protein	63	—	P0A902

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains E, D, F
SO4 · Sulfate ion · ion · 15 copies · chains A, B, C, D, E
MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 2 copies · chains C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6UKL · Crystal Structure of a DiB2-split Protein · the same entry in another collection · chain B against B, TM-score 1.00
P0A902 · AlphaFold monomer V2.0 prediction for outer membrane lipoprotein blc (P0A902) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A902
Elsewhere: RCSB PDB 6UKL · PDBe 6UKL · UniProt P0A902

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.