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Crystal structure of a domain-swapped fluorogen activating protein DIB3 dimer

Analyse Crystal structure of a domain-swapped fluorogen activating protein DIB3 dimer in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6UKK
Type: protein
Length: 158 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Outer membrane lipoprotein blc
UniProt: P0A902
Ligands: NA
Pockets: 2 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 13% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Outer membrane lipoprotein blc	protein	158	13% helix, 34% strand	P0A902

Ligands and binding sites

NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	206	0.50	0.75	27	empty
2	158	0.49	0.77	24	empty

Compared structures

6UKK · Crystal Structure of a Domain-swapped Fluorogen Activating Protein DiB3 Dimer · the same entry in another collection · chain A against A, TM-score 1.00
P0A902 · AlphaFold monomer V2.0 prediction for outer membrane lipoprotein blc (P0A902) · a predicted model of the same protein · chain A against A, TM-score 0.55

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A902
Elsewhere: RCSB PDB 6UKK · PDBe 6UKK · UniProt P0A902

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