Research workbench
C3 symmetric peptide design number 1, sporty, crystal form 2
Analyse C3 symmetric peptide design number 1, sporty, crystal form 2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6UG6
- Type
- protein
- Length
- 48 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- C3-1, sporty, crystal form 2
- Ligands
- NA, PO4, SO4
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | C3-1, sporty, crystal form 2 | protein | 12 | 0% helix, 0% strand | — |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A, C
- PO4 · Phosphate ion · ion · 2 copies · chains B, C, D
- SO4 · Sulfate ion · ion · chains B
- MRD · (4R)-2-methylpentane-2,4-diol · additive · 8 copies · chains A, B, C, D
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 3 copies · chains C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- B–C · 19 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 d-amino (D-amino acid).
Compared structures
- 6UG6 · C3 symmetric peptide design number 1, Sporty, crystal form 2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6UG6 · PDBe 6UG6
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