Research workbench
SAM-bound SAM-IV riboswitch
Analyse SAM-bound SAM-IV riboswitch in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6UET
- Type
- RNA
- Length
- 119 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (119-mer)
- Ligands
- SAM
- Pockets
- 5 · best druggability 0.77
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (119-mer) | rna | 119 | — | — |
Ligands and binding sites
- SAM · S-adenosylmethionine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 844 | 0.77 | 0.81 | 38 | SAM |
| 2 | 325 | 0.55 | 0.76 | 19 | empty |
| 3 | 400 | 0.53 | 0.73 | 26 | empty |
| 4 | 147 | 0.40 | 0.75 | 15 | empty |
| 5 | 104 | 0.39 | 0.76 | 11 | empty |
Compared structures
- 6UET · SAM-bound SAM-IV riboswitch · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6UET · PDBe 6UET
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.