Research workbench
AAV8 baculovirus-SF9 produced, empty capsid
Analyse AAV8 baculovirus-SF9 produced, empty capsid in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6UBM
- Type
- protein
- Length
- 519 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein
- UniProt
- Q8JQF8
- Pockets
- 8 · best druggability 0.50
Structure
electron microscopy · 1 distinct chain · 6% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid protein | protein | 519 | 6% helix, 32% strand | Q8JQF8 |
Pockets
8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 272 | 0.50 | 0.74 | 25 | empty |
| 2 | 146 | 0.48 | 0.77 | 19 | empty |
| 3 | 81 | 0.41 | 0.79 | 21 | empty |
| 4 | 129 | 0.41 | 0.75 | 24 | empty |
| 5 | 148 | 0.40 | 0.73 | 24 | empty |
Compared structures
- 6UBM · AAV8 Baculovirus-Sf9 produced, empty capsid · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8JQF8
- Elsewhere: RCSB PDB 6UBM · PDBe 6UBM · UniProt Q8JQF8
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