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Crystal structure of a GH128 (subgroup V) exo-beta-1,3-glucanase from cryptococcus neoformans (CNGH128_V)
Analyse Crystal structure of a GH128 (subgroup V) exo-beta-1,3-glucanase from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6UB7
- Type
- protein
- Length
- 254 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GLYCO_HYDRO_CC domain-containing protein
- UniProt
- J9VQQ4
- Ligands
- K
- Pockets
- 1 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GLYCO_HYDRO_CC domain-containing protein | protein | 254 | 34% helix, 17% strand | J9VQQ4 |
Ligands and binding sites
- K · Potassium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 230 | 0.53 | 0.76 | 35 | empty |
Compared structures
- 6UB7 · Crystal structure of a GH128 (subgroup V) exo-beta-1,3-glucanase from Cryptococcus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt J9VQQ4
- Elsewhere: RCSB PDB 6UB7 · PDBe 6UB7 · UniProt J9VQQ4
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