Research workbench

Crystal structure (P21 form) of a GH128 (subgroup IV) endo-beta-1,3- glucanase from lentinula edodes (LEGH128_IV) in complex with laminaritriose

Analyse Crystal structure (P21 form) of a GH128 (subgroup IV) endo-beta-1,3- glucanase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6UB5
Type: protein
Length: 251 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Endo-beta-1,3-glucanase
UniProt: G9M5R4
Ligands: BGC, CL
Pockets: 1 · best druggability 0.40

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Endo-beta-1,3-glucanase	protein	251	34% helix, 20% strand	G9M5R4

Ligands and binding sites

BGC · beta-D-glucopyranose · sugar · 5 copies · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	144	0.40	0.74	25	BGC

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6UB5 · Crystal structure (P21 form) of a GH128 (subgroup IV) endo-beta-1,3-glucanase from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G9M5R4
Elsewhere: RCSB PDB 6UB5 · PDBe 6UB5 · UniProt G9M5R4

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.