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Structure of rnd efflux system, outer membrane lipoprotein, nodt family from burkholderia mallei atcc 23344

Analyse Structure of rnd efflux system, outer membrane lipoprotein, nodt family from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6U94
Type: protein
Length: 385 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Rnd efflux system, outer membrane lipoprotein, nodt family
UniProt: A0A0H2WCA9
Pockets: 3 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 70% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Rnd efflux system, outer membrane lipoprotein, nodt family	protein	385	70% helix, 2% strand	A0A0H2WCA9

Ligands and binding sites

GOL · Glycerol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	345	0.61	0.78	31	GOL
2	113	0.42	0.77	18	empty
3	63	0.36	0.78	15	GOL

Compared structures

6U94 · Structure of RND efflux system, outer membrane lipoprotein, NodT family from Burkholderia… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H2WCA9
Elsewhere: RCSB PDB 6U94 · PDBe 6U94 · UniProt A0A0H2WCA9

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