Research workbench
Crystal structure of YCK2 from candida albicans, apoenzyme
Analyse Crystal structure of YCK2 from candida albicans, apoenzyme in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6U69
- Type
- protein
- Length
- 306 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SERINE/THREONINE protein kinase
- UniProt
- A0A1D8PKB4
- Ligands
- SO4, CL
- Pockets
- 3 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SERINE/THREONINE protein kinase | protein | 306 | 36% helix, 17% strand | A0A1D8PKB4 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
- CL · Chloride ion · ion · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 316 | 0.61 | 0.78 | 40 | GOL |
| 2 | 56 | 0.42 | 0.82 | 15 | empty |
| 3 | 62 | 0.28 | 0.73 | 16 | empty |
Compared structures
- 6U69 · Crystal structure of Yck2 from Candida albicans, apoenzyme · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1D8PKB4
- Elsewhere: RCSB PDB 6U69 · PDBe 6U69 · UniProt A0A1D8PKB4
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