Research workbench
Crystal structure of a family 76 glycoside hydrolase from a bovine bacteroides thetaiotaomicron strain
Analyse Crystal structure of a family 76 glycoside hydrolase from a bovine bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6U4Z
- Type
- protein
- Length
- 473 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha-1,6-mannanase
- EC
- 5.1.3.11
- UniProt
- A0A0P0FW82
- Pockets
- 2 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alpha-1,6-mannanase (EC 5.1.3.11) | protein | 473 | 48% helix, 23% strand | A0A0P0FW82 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 248 | 0.62 | 0.81 | 25 | empty |
| 2 | 61 | 0.30 | 0.74 | 17 | EDO |
Compared structures
- 6U4Z · Crystal Structure of a family 76 glycoside hydrolase from a bovine Bacteroides… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0P0FW82
- Elsewhere: RCSB PDB 6U4Z · PDBe 6U4Z · UniProt A0A0P0FW82
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