Research workbench
AAV8 baculovirus-SF9 produced, full capsid
Analyse AAV8 baculovirus-SF9 produced, full capsid in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6U2V
- Type
- protein
- Length
- 519 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein
- UniProt
- Q8JQF8
- Pockets
- 6 · best druggability 0.67
Structure
electron microscopy · 1 distinct chain · 7% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid protein | protein | 519 | 7% helix, 30% strand | Q8JQF8 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 588 | 0.67 | 0.77 | 68 | empty |
| 2 | 92 | 0.45 | 0.80 | 24 | empty |
| 3 | 165 | 0.42 | 0.74 | 28 | empty |
| 4 | 124 | 0.41 | 0.76 | 20 | empty |
| 5 | 141 | 0.38 | 0.73 | 25 | empty |
Compared structures
- 6U2V · AAV8 Baculovirus-Sf9 produced, full capsid · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8JQF8
- Elsewhere: RCSB PDB 6U2V · PDBe 6U2V · UniProt Q8JQF8
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