Research workbench
Shya endopeptidase from vibrio cholera (open form)
Analyse Shya endopeptidase from vibrio cholera (open form) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6U2A
- Type
- protein
- Length
- 358 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Shya endopeptidase
- EC
- 3.4.24.75
- UniProt
- A0A0H6MKE7
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Shya endopeptidase (EC 3.4.24.75) | protein | 358 | 17% helix, 38% strand | A0A0H6MKE7 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 150 | 0.50 | 0.79 | 28 | empty |
| 2 | 86 | 0.31 | 0.73 | 19 | empty |
Compared structures
- 6U2A · ShyA endopeptidase from Vibrio cholera (open form) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H6MKE7
- Elsewhere: RCSB PDB 6U2A · PDBe 6U2A · UniProt A0A0H6MKE7
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