Research workbench
W96F oxalate decarboxylase (B. subtilis)
Analyse W96F oxalate decarboxylase (B. subtilis) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6TZP
- Type
- protein
- Length
- 377 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oxalate decarboxylase
- UniProt
- A0A162QMS4
- Ligands
- MN
- Pockets
- 2 · best druggability 0.30
Structure
x-ray diffraction · 1 distinct chain · 15% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Oxalate decarboxylase | protein | 377 | 15% helix, 40% strand | A0A162QMS4 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.30 | 0.74 | 12 | empty |
| 2 | 53 | 0.28 | 0.74 | 16 | empty |
Compared structures
- 6TZP · W96F Oxalate Decarboxylase (B. subtilis) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A162QMS4
- Elsewhere: RCSB PDB 6TZP · PDBe 6TZP · UniProt A0A162QMS4
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