Research workbench
Ct part crystal structure of the rymv-encoded viral RNA silencing suppressor P1
Analyse Ct part crystal structure of the rymv-encoded viral RNA silencing suppressor P1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6TY2
- Type
- protein
- Length
- 107 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- P1
- UniProt
- Q709H6
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | P1 | protein | 54 | 46% helix, 11% strand | Q709H6 |
| B | P1 | protein | 53 | 43% helix, 11% strand | Q709H6 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 185 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 6TY2 · Ct part crystal structure of the rymv-encoded viral RNA silencing suppressor P1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q709H6
- Elsewhere: RCSB PDB 6TY2 · PDBe 6TY2 · UniProt Q709H6
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