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Beta-endorphin amyloid fibril

Analyse Beta-endorphin amyloid fibril in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6TUB
Type: protein
Length: 186 residues
Chains: 6
Method: solid-state nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-endorphin
UniProt: P01189

Structure

solid-state nmr · 1 distinct chain · 0% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F	Beta-endorphin	protein	31	0% helix, 35% strand	P01189

Interfaces

9 interfaces between chains.

A–B · 1384 Å² buried · 37 hydrogen bonds · protein-protein
B–C · 1381 Å² buried · 38 hydrogen bonds · protein-protein
D–E · 1378 Å² buried · 37 hydrogen bonds · protein-protein
C–D · 1376 Å² buried · 38 hydrogen bonds · protein-protein
E–F · 1375 Å² buried · 35 hydrogen bonds · protein-protein

Compared structures

6TUB · Beta-endorphin amyloid fibril · the same entry in another collection · chain F against F, TM-score 1.00
P01189 · AlphaFold monomer V2.0 prediction for pro-opiomelanocortin (P01189) · a predicted model of the same protein · chain F against A, TM-score 0.21

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01189
Elsewhere: RCSB PDB 6TUB · PDBe 6TUB · UniProt P01189

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