Research workbench
Neutral invertase 2 from arabidopsis thaliana
Analyse Neutral invertase 2 from arabidopsis thaliana in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6TTJ
- Type
- protein
- Length
- 5,261 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ALKALINE/NEUTRAL invertase CINV1
- EC
- 3.2.1.26
- UniProt
- Q9LQF2
- Pockets
- 20 · best druggability 0.88
Structure
x-ray diffraction · 12 distinct chains · 49% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ALKALINE/NEUTRAL invertase CINV1 (EC 3.2.1.26) | protein | 434 | 47% helix, 13% strand | Q9LQF2 |
| B | ALKALINE/NEUTRAL invertase CINV1 (EC 3.2.1.26) | protein | 438 | 49% helix, 11% strand | Q9LQF2 |
| C | ALKALINE/NEUTRAL invertase CINV1 (EC 3.2.1.26) | protein | 441 | 49% helix, 13% strand | Q9LQF2 |
| D | ALKALINE/NEUTRAL invertase CINV1 (EC 3.2.1.26) | protein | 440 | 49% helix, 12% strand | Q9LQF2 |
| E | ALKALINE/NEUTRAL invertase CINV1 (EC 3.2.1.26) | protein | 438 | 49% helix, 12% strand | Q9LQF2 |
| F | ALKALINE/NEUTRAL invertase CINV1 (EC 3.2.1.26) | protein | 441 | 48% helix, 12% strand | Q9LQF2 |
| G | ALKALINE/NEUTRAL invertase CINV1 (EC 3.2.1.26) | protein | 440 | 48% helix, 12% strand | Q9LQF2 |
| H | ALKALINE/NEUTRAL invertase CINV1 (EC 3.2.1.26) | protein | 439 | 49% helix, 12% strand | Q9LQF2 |
| I | ALKALINE/NEUTRAL invertase CINV1 (EC 3.2.1.26) | protein | 434 | 50% helix, 12% strand | Q9LQF2 |
| J | ALKALINE/NEUTRAL invertase CINV1 (EC 3.2.1.26) | protein | 440 | 48% helix, 13% strand | Q9LQF2 |
| K | ALKALINE/NEUTRAL invertase CINV1 (EC 3.2.1.26) | protein | 439 | 48% helix, 12% strand | Q9LQF2 |
| L | ALKALINE/NEUTRAL invertase CINV1 (EC 3.2.1.26) | protein | 437 | 48% helix, 12% strand | Q9LQF2 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1003 | 0.88 | 0.89 | 127 | empty |
| 2 | 900 | 0.87 | 0.89 | 106 | empty |
| 3 | 755 | 0.85 | 0.89 | 84 | empty |
| 4 | 458 | 0.83 | 0.90 | 49 | empty |
| 5 | 675 | 0.82 | 0.86 | 81 | empty |
Interfaces
27 interfaces between chains.
- K–L · 3318 Ų buried · 29 hydrogen bonds · protein-protein
- G–H · 3303 Ų buried · 24 hydrogen bonds · protein-protein
- I–J · 3292 Ų buried · 23 hydrogen bonds · protein-protein
- A–B · 3282 Ų buried · 24 hydrogen bonds · protein-protein
- C–D · 3262 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
- 6TTJ · Neutral invertase 2 from Arabidopsis thaliana · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LQF2
- Elsewhere: RCSB PDB 6TTJ · PDBe 6TTJ · UniProt Q9LQF2
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