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Isometric capsid of empty gta particle computed with I4(I,N25R) symmetry

Analyse Isometric capsid of empty gta particle computed with I4(I,N25R) symmetry in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6TSW
Type: protein
Length: 885 residues
Chains: 3
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Major capsid protein RCC01687
UniProt: D5ATZ3
Pockets: 5 · best druggability 0.54

Structure

electron microscopy · 2 distinct chains · 18% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, C	Major capsid protein RCC01687	protein	297	19% helix, 22% strand	D5ATZ3
A	Major capsid protein RCC01687	protein	291	17% helix, 24% strand	D5ATZ3

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	283	0.54	0.76	41	empty
2	119	0.46	0.78	20	empty
3	74	0.44	0.81	19	empty
4	57	0.38	0.80	15	empty
5	57	0.28	0.74	14	empty

Interfaces

2 interfaces between chains.

B–C · 2476 Å² buried · 25 hydrogen bonds · protein-protein
C–A · 875 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

6TSW · Isometric capsid of empty GTA particle computed with I4(I,n25r) symmetry · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D5ATZ3
Elsewhere: RCSB PDB 6TSW · PDBe 6TSW · UniProt D5ATZ3

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