Research workbench
D0-D1 domain of intimin
Analyse D0-D1 domain of intimin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6TPL
- Type
- protein
- Length
- 393 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Intimin
- UniProt
- H3JUW4
- Ligands
- MG, CL
- Pockets
- 3 · best druggability 0.54
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Intimin | protein | 198 | 0% helix, 54% strand | H3JUW4 |
| B | Intimin | protein | 195 | 0% helix, 55% strand | H3JUW4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 309 | 0.54 | 0.75 | 43 | CL |
| 2 | 200 | 0.48 | 0.75 | 36 | CL |
| 3 | 102 | 0.33 | 0.72 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 374 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 6TPL · D0-D1 domain of Intimin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H3JUW4
- Elsewhere: RCSB PDB 6TPL · PDBe 6TPL · UniProt H3JUW4
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