Research workbench
Cryo-EM structure of toxoplasma gondii mitochondrial ATP synthase dimer, OSCP/F1/C-ring model
Analyse Cryo-EM structure of toxoplasma gondii mitochondrial ATP synthase dimer… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6TMH
- Type
- protein
- Length
- 4,264 residues
- Chains
- 21
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A125YJP2, S7UU80, A0A125YYY4, A0A125YUH0, A0A125YRE2, S7VV10, A0A125YKF8, A0A125YJV2
- Ligands
- ATP, ADP, MG
Structure
electron microscopy · 11 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| i | — | protein | 40 | — | A0A125YJP2 |
| A | — | protein | 512 | — | S7UU80 |
| E | — | protein | 507 | — | S7UU80 |
| C | — | protein | 487 | — | S7UU80 |
| B | — | protein | 479 | — | A0A125YYY4 |
| F, D | — | protein | 475 | — | A0A125YYY4 |
| g | — | protein | 272 | — | A0A125YUH0 |
| d | — | protein | 143 | — | A0A125YRE2 |
| e | — | protein | 65 | — | S7VV10 |
| G | — | protein | 99 | — | A0A125YKF8 |
| H, I, J, K, L, M, N, O, P, Q | — | protein | 71 | — | A0A125YJV2 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 3 copies · chains A, B, E, F, C, D
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains C, B, D
- MG · Magnesium ion · metal · 5 copies · chains A, E, C, B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6TMH · Cryo-EM structure of Toxoplasma gondii mitochondrial ATP synthase dimer, OSCP/F1/c-ring… · the same entry in another collection · chain i against i, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A125YJP2
- Every structure of UniProt S7UU80
- Every structure of UniProt A0A125YYY4
- Every structure of UniProt A0A125YUH0
- Every structure of UniProt A0A125YRE2
- Every structure of UniProt S7VV10
- Every structure of UniProt A0A125YKF8
- Every structure of UniProt A0A125YJV2
- Elsewhere: RCSB PDB 6TMH · PDBe 6TMH · UniProt A0A125YJP2 · UniProt S7UU80 · UniProt A0A125YYY4 · UniProt A0A125YUH0 · UniProt A0A125YRE2 · UniProt S7VV10 · UniProt A0A125YKF8 · UniProt A0A125YJV2
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