Research workbench
Photosensory module (pas-gaf-phy) of glycine max phyb
Analyse Photosensory module (pas-gaf-phy) of glycine max phyb in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6TL4
- Type
- protein
- Length
- 496 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phytochrome
- UniProt
- I1MGE5
- Ligands
- CYC
- Pockets
- 5 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phytochrome | protein | 496 | 34% helix, 25% strand | I1MGE5 |
Ligands and binding sites
- CYC · Phycocyanobilin · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 378 | 0.83 | 0.91 | 47 | CYC |
| 2 | 290 | 0.63 | 0.80 | 29 | empty |
| 3 | 127 | 0.44 | 0.77 | 25 | empty |
| 4 | 105 | 0.36 | 0.73 | 18 | empty |
| 5 | 70 | 0.31 | 0.74 | 14 | empty |
Modifications
Observed in the structure: 1 cofactor (phycocyanobilin attachment).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I1MGE5
- Elsewhere: RCSB PDB 6TL4 · PDBe 6TL4 · UniProt I1MGE5
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