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Crystal structure of a capsule-specific depolymerase produced by klebsiella phage
Analyse Crystal structure of a capsule-specific depolymerase produced by klebsiella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6TKU
- Type
- protein
- Length
- 545 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Depolymerase KP32GP38
- UniProt
- D1L2X1
- Pockets
- 4 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Depolymerase KP32GP38 | protein | 545 | 4% helix, 44% strand | D1L2X1 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 164 | 0.53 | 0.80 | 24 | empty |
| 2 | 59 | 0.43 | 0.82 | 16 | empty |
| 3 | 74 | 0.32 | 0.75 | 21 | empty |
| 4 | 50 | 0.23 | 0.71 | 13 | empty |
Modifications
Observed in the structure: 11 modified (engineered).
Compared structures
- 6TKU · Crystal structure of a capsule-specific depolymerase produced by Klebsiella phage · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D1L2X1
- Elsewhere: RCSB PDB 6TKU · PDBe 6TKU · UniProt D1L2X1
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