Research workbench
Cytochrome C from thioalkalivibrio paradoxus
Analyse Cytochrome C from thioalkalivibrio paradoxus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6TK0
- Type
- protein
- Length
- 153 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C, mono-and diheme variants family
- UniProt
- L0DXU7
- Ligands
- HEC
- Pockets
- 4 · best druggability 0.64
Structure
solution nmr · 1 distinct chain · 32% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Cytochrome C, mono-and diheme variants family | protein | 153 | 32% helix, 0% strand | L0DXU7 |
Ligands and binding sites
- HEC · Heme C · ligand · chains X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 318 | 0.64 | 0.80 | 31 | HEC |
| 2 | 138 | 0.44 | 0.76 | 25 | empty |
| 3 | 125 | 0.43 | 0.77 | 21 | empty |
| 4 | 80 | 0.41 | 0.79 | 16 | empty |
Modifications
Observed in the structure: 2 cofactor (heme c attachment).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt L0DXU7
- Elsewhere: RCSB PDB 6TK0 · PDBe 6TK0 · UniProt L0DXU7
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