Research workbench
Crystal structure of the computationally designed CAKE10 protein
Analyse Crystal structure of the computationally designed CAKE10 protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6TJI
- Type
- protein
- Length
- 720 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CAKE10
- Ligands
- PO4
- Pockets
- 5 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | CAKE10 | protein | 360 | 0% helix, 43% strand | — |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 520 | 0.59 | 0.74 | 30 | empty |
| 2 | 407 | 0.54 | 0.73 | 29 | empty |
| 3 | 159 | 0.48 | 0.77 | 28 | empty |
| 4 | 152 | 0.46 | 0.76 | 23 | empty |
| 5 | 62 | 0.44 | 0.83 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 537 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 6TJI · Crystal structure of the computationally designed Cake10 protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6TJI · PDBe 6TJI
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.