Research workbench
Crystal structure of the computationally designed CAKE5 protein
Analyse Crystal structure of the computationally designed CAKE5 protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6TJE
- Type
- protein
- Length
- 353 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CAKE5
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CAKE5 | protein | 186 | 0% helix, 39% strand | — |
| B | CAKE5 | protein | 167 | 0% helix, 39% strand | — |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.68 | 0.96 | 22 | empty |
| 2 | 73 | 0.61 | 0.90 | 28 | empty |
| 3 | 154 | 0.36 | 0.71 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 1386 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 6TJE · Crystal structure of the computationally designed Cake5 protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6TJE · PDBe 6TJE
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